Biomolecular Simulations

Biomolecular Simulations

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Recordings of lectures in the MSc course Biomolecular Simulations
-Structure
-Force fields
-Molecular Dynamics
-Enhanced sampling

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Biased sampling - live 1 of 15

duration 1 hour 32 minutes

Biased sampling - live

Biased sampling - live

Biased sampling - live

Biased sampling - live

Part 0: Recap free energyPart 1: Steered Molecular DynamicsPart 2: Biased sampling-umbrella sampling-metadynamicsPart 3: The reaction coordinate problem-path-metadynamics

From Jocelyne Vreede

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Biased sampling - part 1 2 of 15

duration 32 minutes 58 seconds

Biased sampling - part 1

Biased sampling - part 1

Biased sampling - part 1

Biased sampling - part 1

Part 0: Recap free energyPart 1: Steered Molecular DynamicsPart 2: Biased sampling-umbrella sampling-metadynamicsPart 3: The reaction coordinate problem

From Jocelyne Vreede

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Biased sampling - part 2 3 of 15

duration 19 minutes 46 seconds

Biased sampling - part 2

Biased sampling - part 2

Biased sampling - part 2

Biased sampling - part 2

Part 0: Recap free energyPart 1: Steered Molecular DynamicsPart 2: Biased sampling-umbrella sampling-metadynamicsPart 3: The reaction coordinate problem

From Jocelyne Vreede

0 likes 19 plays 0
Biased sampling - part 3 4 of 15

duration 29 minutes 52 seconds

Biased sampling - part 3

Biased sampling - part 3

Biased sampling - part 3

Biased sampling - part 3

Part 0: Recap free energyPart 1: Steered Molecular DynamicsPart 2: Biased sampling-umbrella sampling-metadynamicsPart 3: The reaction coordinate problem

From Jocelyne Vreede

0 likes 25 plays 0
Biased sampling - part 4 5 of 15

duration 24 minutes 44 seconds

Biased sampling - part 4

Biased sampling - part 4

Biased sampling - part 4

Biased sampling - part 4

Part 0: Recap free energyPart 1: Steered Molecular DynamicsPart 2: Biased sampling-umbrella sampling-metadynamicsPart 3: The reaction coordinate problem

From Jocelyne Vreede

0 likes 22 plays 0
Force fields - part 1 6 of 15

duration 48 minutes 28 seconds

Force fields - part 1

Force fields - part 1

Force fields - part 1

Force fields - part 1

Lecture in Biomolecular Simulations Force fields Daan Geerke

From Jocelyne Vreede

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Force fields - part 2a 7 of 15

duration 28 minutes 7 seconds

Force fields - part 2a

Force fields - part 2a

Force fields - part 2a

Force fields - part 2a

Lecture in Biomolecular Simulations Force fields Daan Geerke

From Jocelyne Vreede

0 likes 6 plays 0
Force fields - part 2b 8 of 15

duration 58 minutes 6 seconds

Force fields - part 2b

Force fields - part 2b

Force fields - part 2b

Force fields - part 2b

Lecture in Biomolecular Simulations Force fields Daan Geerke

From Jocelyne Vreede

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gromacs-tutorial 9 of 15

duration 30 minutes 49 seconds

gromacs-tutorial

gromacs-tutorial

gromacs-tutorial

gromacs-tutorial

Demonstration of the gromacs tutorial

From Jocelyne Vreede

0 likes 13 plays 0
Lecture 1 - structure - part1 10 of 15

duration 34 minutes 22 seconds

Lecture 1 - structure - part1

Lecture 1 - structure - part1

Lecture 1 - structure - part1

Lecture 1 - structure - part1

Lecture on structure and structure determination of biomolecules

From Jocelyne Vreede

0 likes 74 plays 0
Lecture 1 - structure - part2 11 of 15

duration 37 minutes 32 seconds

Lecture 1 - structure - part2

Lecture 1 - structure - part2

Lecture 1 - structure - part2

Lecture 1 - structure - part2

Lecture on structure and structure determination of biomolecules

From Jocelyne Vreede

0 likes 58 plays 0
Lecture 1 - structure - part3 12 of 15

duration 25 minutes 21 seconds

Lecture 1 - structure - part3

Lecture 1 - structure - part3

Lecture 1 - structure - part3

Lecture 1 - structure - part3

Lecture on structure and structure determination of biomolecules

From Jocelyne Vreede

0 likes 36 plays 0
Lecture 1 - structure - part4 13 of 15

duration 8 minutes 9 seconds

Lecture 1 - structure - part4

Lecture 1 - structure - part4

Lecture 1 - structure - part4

Lecture 1 - structure - part4

Lecture on structure and structure determination of biomolecules

From Jocelyne Vreede

0 likes 23 plays 0
Lecture 2 - Molecular Dynamics - part1 14 of 15

duration 16 minutes 42 seconds

Lecture 2 - Molecular Dynamics - part1

Lecture 2 - Molecular Dynamics - part1

Lecture 2 - Molecular Dynamics - part1

Lecture 2 - Molecular Dynamics - part1

Biomolecular Simulations Lecture on Molecular Dynamics

From Jocelyne Vreede

0 likes 54 plays 0
Lecture 2 - Molecular Dynamics - part2 15 of 15

duration 16 minutes 28 seconds

Lecture 2 - Molecular Dynamics - part2

Lecture 2 - Molecular Dynamics - part2

Lecture 2 - Molecular Dynamics - part2

Lecture 2 - Molecular Dynamics - part2

Biomolecular Simulations Lecture on Molecular Dynamics

From Jocelyne Vreede

0 likes 47 plays 0

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